openfold 0.0.1

A PyTorch reimplementation of DeepMind's AlphaFold 2

Stars: 2397, Watchers: 2397, Forks: 435, Open Issues: 160

The aqlaboratory/openfold repo was created 2 years ago and the last code push was an hour ago.
The project is very popular with an impressive 2397 github stars!

How to Install openfold

You can install openfold using pip

pip install openfold

or add it to a project with poetry

poetry add openfold

Package Details

Author

Juncong Moo,Gustaf Ahdritz & DeepMind

License

Apache License, Version 2.0

Homepage

https://github.com/aqlaboratory/openfold

PyPi:

https://pypi.org/project/openfold/

GitHub Repo:

https://github.com/aqlaboratory/openfold

Classifiers

Related Packages

Errors

A list of common openfold errors.

Code Examples

Here are some openfold code examples and snippets.

GitHub Issues

The openfold package has 160 open issues on GitHub

• Compatibility issues between versions of packages/libraries while running ESMFold
• No module named 'scripts.utils'
• Improve comments
• openfold.utils.kernel.csrc' as an importable package[^1], when pip install 'openfold @ git+https://github.com/aqlaboratory/openfold.git@4b41059694619831a7db195b7e0988fc4ff3a307'
• System Requirements
• Validation set used in the OpenFold paper
• Unexpected key(s) in state_dict: "aux_heads.tm.linear.weight", "aux_heads.tm.linear.bias"
• Run "scripts/precompute_alignments_mmseqs.py" Error
• Unable to downgrade g++
• Aqlaboratory/multimer
• Output of between_residue_bond_loss has a batch dimension
• Support latest version of Lightning
• Upgrade DeepSpeed version?
• A question about the parameter cluster_file in generate_chain_data_cache.py.

See more issues on GitHub