openfold 0.0.1

A PyTorch reimplementation of DeepMind's AlphaFold 2

Stars: 2751, Watchers: 2751, Forks: 523, Open Issues: 190

The aqlaboratory/openfold repo was created 3 years ago and the last code push was 2 months ago.
The project is very popular with an impressive 2751 github stars!

How to Install openfold

You can install openfold using pip

pip install openfold

or add it to a project with poetry

poetry add openfold

Package Details

Author

Juncong Moo,Gustaf Ahdritz & DeepMind

License

Apache License, Version 2.0

Homepage

https://github.com/aqlaboratory/openfold

PyPi:

https://pypi.org/project/openfold/

GitHub Repo:

https://github.com/aqlaboratory/openfold

Classifiers

Related Packages

Errors

A list of common openfold errors.

Code Examples

Here are some openfold code examples and snippets.

GitHub Issues

The openfold package has 190 open issues on GitHub

• Compatibility issues between versions of packages/libraries while running ESMFold
• No module named 'scripts.utils'
• Improve comments
• openfold.utils.kernel.csrc' as an importable package[^1], when pip install 'openfold @ git+https://github.com/aqlaboratory/openfold.git@4b41059694619831a7db195b7e0988fc4ff3a307'
• System Requirements
• Validation set used in the OpenFold paper
• Unexpected key(s) in state_dict: "aux_heads.tm.linear.weight", "aux_heads.tm.linear.bias"
• Run "scripts/precompute_alignments_mmseqs.py" Error
• Unable to downgrade g++
• Aqlaboratory/multimer
• Output of between_residue_bond_loss has a batch dimension
• Support latest version of Lightning
• Upgrade DeepSpeed version?
• A question about the parameter cluster_file in generate_chain_data_cache.py.

See more issues on GitHub