neuron 9.0.1

Empirically-based simulator for modeling neurons and networks of neurons

Stars: 493, Watchers: 493, Forks: 136, Open Issues: 420

The neuronsimulator/nrn repo was created 9 years ago and the last code push was 6 days ago.
The project is popular with 493 github stars!

How to Install neuron

You can install neuron using pip

pip install neuron

or add it to a project with poetry

poetry add neuron

Package Details

Author

Yale, Blue Brain Project

License

Copyright (c) 2018, Michael Hines All rights reserved.

     This Copyright refers to all files in this distribution that do not have
     an explicit Copyright notice. See:
     grep -r '\<Copyright\>' *
     
     All files are intended to have a license compatible with the following
     "three clause" open source BSD license.  Please notify
     [email protected] if you believe any file is not compatible with
     the "three clause" open source BSD license. 
     
     Redistribution and use in source and binary forms, with or without
     modification are permitted provided that the following conditions are met:
     
     1.  Redistributions of source code must retain the above copyright
     notice, this list of conditions, and the following disclaimer.
     
     2.  Redistributions in binary form must reproduce the above copyright
     notice, this list of conditions, and the following disclaimer in the
     documentation and/or other materials provided with the distribution. 
     
     3.  Neither the name of the copyright holder nor the names of its
     contributors may be used to endorse or promote products derived from
     this software without specific prior written permission. 
     
     THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
     IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
     TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
     PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT
     HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
     SPECIAL, EXEMPLARY OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
     TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
     PROFITS; OR BUSINESS INTERRUPTION HOWEVER CAUSED AND ON ANY THEORY OF
     LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
     NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
     SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 
     
     </dd>

Homepage

None

PyPi:

https://pypi.org/project/neuron/

GitHub Repo:

https://github.com/neuronsimulator/nrn

Classifiers

• Scientific/Engineering

Related Packages

Errors

A list of common neuron errors.

Code Examples

Here are some neuron code examples and snippets.

GitHub Issues

The neuron package has 420 open issues on GitHub

• Remove nocmodl from nrnivmodl-cmake?
• Fixes for nrnivmodl-cmake
• For release/8.2 fix the Neumann BC for extracellular diffusion (see #3690)
• $DYLD_LIBRARY_PATH may be cleared unexpectedly
• Fix CI for release/8.2
• release/8.2 problem with aliases in LinearCircuit builder
• Release 8.2: Fix alias lookup bug by replacing InterViews String with std::string.
• Add PDF format support to Read the Docs config
• Bump fonttools from 4.58.0 to 4.61.0 in /ci
• Add state_discontinuity codegen outside of NET_RECEIVE blocks
• Add "matexp" solver to nmodl
• Hines/winwheel native windows
• Try to fix coverage for share/lib/python/neuron
• Remove dead code in crout
• FIX: use canonical paths and a set when checking loaded dlls

See more issues on GitHub