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biopython 1.83

0

Freely available tools for computational molecular biology.

Freely available tools for computational molecular biology.

Stars: 4120, Watchers: 4120, Forks: 1706, Open Issues: 552

The biopython/biopython repo was created 15 years ago and the last code push was 16 hours ago.
The project is very popular with an impressive 4120 github stars!

How to Install biopython

You can install biopython using pip

pip install biopython

or add it to a project with poetry

poetry add biopython

Package Details

Author
The Biopython Contributors
License
Homepage
https://biopython.org/
PyPi:
https://pypi.org/project/biopython/
Documentation:
https://biopython.org/wiki/Documentation
GitHub Repo:
https://github.com/biopython/biopython

Classifiers

  • Scientific/Engineering
  • Scientific/Engineering/Bio-Informatics
  • Software Development/Libraries/Python Modules
No  biopython  pypi packages just yet.

Errors

A list of common biopython errors.

Code Examples

Here are some biopython code examples and snippets.

GitHub Issues

The biopython package has 552 open issues on GitHub

  • CEAligner module for structural alignment of 3d molecules
  • CONTRIBUTING.rst: Recommend local testing offline?
  • Insecure Temporary File using tempfile.mktemp()
  • Parsing PHYLIP distance matrices
  • Add SeqFeature sub
  • GitHub actions mysql libstdc++.so.6: cannot allocate memory in static TLS block
  • Define SeqFeature sub for integer offset
  • SVDSuperimposer._rms() is wrong?
  • Bio Entrez elink doctest fail
  • Include return type of Tree on Phylo.read
  • internal-coords vector assembly update
  • Failure to parse origin-spanning features
  • Why Entrez.efech from byopython is outputing "internal server error 500"?
  • Remove prefix remove suffix
  • Add .removeprefix and .removesuffix to Seq object (and subclasses)

See more issues on GitHub