biopython 1.84

Freely available tools for computational molecular biology.

Stars: 4352, Watchers: 4352, Forks: 1744, Open Issues: 561

The biopython/biopython repo was created 15 years ago and the last code push was 4 days ago.
The project is very popular with an impressive 4352 github stars!

How to Install biopython

You can install biopython using pip

pip install biopython

or add it to a project with poetry

poetry add biopython

Package Details

Author

The Biopython Contributors

License

None

Homepage

https://biopython.org/

PyPi:

https://pypi.org/project/biopython/

Documentation:

https://biopython.org/wiki/Documentation

GitHub Repo:

https://github.com/biopython/biopython

Classifiers

• Scientific/Engineering
• Scientific/Engineering/Bio-Informatics
• Software Development/Libraries/Python Modules

Related Packages

Errors

A list of common biopython errors.

Code Examples

Here are some biopython code examples and snippets.

GitHub Issues

The biopython package has 561 open issues on GitHub

• CEAligner module for structural alignment of 3d molecules
• CONTRIBUTING.rst: Recommend local testing offline?
• Insecure Temporary File using tempfile.mktemp()
• Parsing PHYLIP distance matrices
• Add SeqFeature sub
• GitHub actions mysql libstdc++.so.6: cannot allocate memory in static TLS block
• Define SeqFeature sub for integer offset
• SVDSuperimposer._rms() is wrong?
• Bio Entrez elink doctest fail
• Include return type of Tree on Phylo.read
• internal-coords vector assembly update
• Failure to parse origin-spanning features
• Why Entrez.efech from byopython is outputing "internal server error 500"?
• Remove prefix remove suffix
• Add .removeprefix and .removesuffix to Seq object (and subclasses)

See more issues on GitHub